PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0346s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 349aa    MW: 39091.5 Da    PI: 8.9138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0346s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.11.1e-55171421128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k++ +ekewyfF+ rd+ky+tg r+nrat++gyWkatg
  SapurV1A.0346s0160.1.p  17 LPPGFRFHPTDEELISHYLYKKVLDITFSA-KAIGDVDLNKSEPWELPWKANMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATG 102
                             79**************************99.88***************888999********************************* PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             kdke+++ ++ lvg+kktLvfykgrapkgekt+Wvmheyrl
  SapurV1A.0346s0160.1.p 103 KDKEIYR-GKFLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 142
                             *******.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6413167IPR003441NAC domain
PROSITE profilePS5100559.42317167IPR003441NAC domain
PfamPF023652.1E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MENISGRGKE GDGQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFSAKAIG DVDLNKSEPW  60
ELPWKANMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLDGRFSVHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLA  180
RLGSFSNELG PSGLPPLMDS PPCNGKIKPV AESVYVPCFS NPINVQRNQQ DTIDSFNNHL  240
LAASANPLEV FPRIPLLNPF CTTQAVPASG NLQYPGSVLM QDHSVLRALI SNQGTNMKQQ  300
SFKTERDLNA EISSVISNLE VGKRSSDDLD GTPSTLVPSM DLDCFWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-541417314171NAC domain-containing protein 19
4dul_A1e-541417314171NAC domain-containing protein 19
1ut7_B1e-541417314171NO APICAL MERISTEM PROTEIN
1ut7_A1e-541417314171NO APICAL MERISTEM PROTEIN
1ut4_B1e-541417314171NO APICAL MERISTEM PROTEIN
1ut4_A1e-541417314171NO APICAL MERISTEM PROTEIN
3swp_D2e-541417317174NAC domain-containing protein 19
3swp_C2e-541417317174NAC domain-containing protein 19
3swp_B2e-541417317174NAC domain-containing protein 19
3swp_A2e-541417317174NAC domain-containing protein 19
3swm_D2e-541417317174NAC domain-containing protein 19
3swm_C2e-541417317174NAC domain-containing protein 19
3swm_B2e-541417317174NAC domain-containing protein 19
3swm_A2e-541417317174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321447.10.0no apical meristem-like family protein
SwissprotQ9FLJ21e-148NC100_ARATH; NAC domain-containing protein 100
TrEMBLB9IDX40.0B9IDX4_POPTR; No apical meristem-like family protein
STRINGPOPTR_0015s02170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-149NAC domain containing protein 100